How to Track Cost of Goods Sold (COGS) for SaaS Companies: The Executive Guide

June 21, 2025

Understanding COGS in the SaaS Context

Cost of Goods Sold (COGS) is a fundamental financial metric that has evolved significantly as businesses have migrated from physical products to digital services. For SaaS executives, properly tracking and understanding COGS is crucial for accurate financial reporting, strategic planning, and maintaining healthy gross margins.

Unlike traditional businesses where COGS typically includes raw materials and direct labor, SaaS COGS encompasses the direct costs associated with delivering and maintaining your software service. Tracking these costs correctly not only ensures compliance with accounting standards but provides critical insights that drive strategic business decisions.

Why Proper COGS Tracking Matters for SaaS Executives

Before diving into tracking methodologies, it's important to understand why COGS matters specifically in the SaaS context:

  1. Gross Margin Analysis: According to KeyBanc Capital Markets' SaaS survey, top-performing SaaS companies maintain gross margins above 75%. Accurate COGS tracking is essential to calculate and optimize this critical metric.

  2. Investor Scrutiny: As venture funding becomes more selective, investors are paying closer attention to unit economics. A clear understanding of your COGS demonstrates financial discipline.

  3. Scalability Planning: Understanding the relationship between customer growth and cost increases helps forecast capital needs and identify potential scaling challenges.

  4. Pricing Strategy: Knowledge of your true service delivery costs forms the foundation for sustainable pricing models.

What Constitutes COGS in SaaS

The first challenge in tracking SaaS COGS is defining what should be included. According to GAAP standards and industry best practices, SaaS COGS typically includes:

Direct Infrastructure Costs

  • Cloud hosting fees (AWS, Azure, GCP, etc.)
  • Data storage costs
  • Content delivery network (CDN) expenses
  • Third-party API usage fees
  • Database management costs

Customer Support and Success

  • Support personnel salaries and benefits (proportional to direct customer service activities)
  • Support platform subscriptions
  • Customer onboarding costs

Implementation and Professional Services

  • Implementation team costs
  • Professional services delivery expenses
  • Customer-specific customization expenses

Third-Party Software

  • Software licenses included in your offering
  • Technology that directly enables service delivery

Amortized Development Costs

  • Capitalized software development costs (amortized over the useful life)
  • Maintenance engineering specifically for existing features

Step-by-Step Framework for Tracking SaaS COGS

1. Establish a Clear COGS Policy

Begin by creating a documented policy that defines what your company considers COGS versus operating expenses. This policy should:

  • Align with GAAP standards while reflecting your specific business model
  • Establish clear rules for allocation of shared resources
  • Define processes for regular review and updates
  • Be reviewed by your financial advisors or auditors

2. Configure Your Financial Systems for Proper Allocation

Most accounting challenges stem from improper system configuration. Ensure your financial systems support:

  • Departmental or function-based cost tracking
  • Project codes for development activities
  • Clear distinction between maintenance and new feature development
  • Automation of recurring allocations

According to a study by the Technology & Services Industry Association (TSIA), companies that implement proper cost allocation systems see an average 12% improvement in gross margin reporting accuracy.

3. Implement Usage-Based Infrastructure Tracking

Cloud infrastructure often represents the largest component of SaaS COGS. Implement systems to:

  • Track cloud resources by customer or customer segment
  • Monitor usage patterns to identify optimization opportunities
  • Tag resources properly for accurate cost allocation
  • Consider implementing tools like CloudHealth, AWS Cost Explorer, or Cloudability

4. Develop Labor Allocation Methodologies

For teams that split time between COGS and non-COGS activities:

  • Implement time tracking with project codes
  • Establish percentage allocations based on role responsibilities
  • Review and adjust allocations quarterly
  • Consider activity-based costing for more precise allocation

5. Create Regular Reconciliation Processes

Develop a cadence for reviewing COGS allocations:

  • Monthly reconciliation of actual versus budgeted COGS
  • Quarterly review of allocation percentages
  • Adjustment of tracking methodologies as your business evolves

Advanced COGS Tracking Strategies for SaaS Leaders

Customer-Level COGS Analysis

Understanding COGS at the individual customer or segment level provides powerful insights:

  • Identify high-maintenance customers with disproportionate support needs
  • Recognize infrastructure efficiency patterns across customer segments
  • Calculate true customer profitability beyond simple revenue metrics

According to research by Pacific Crest Securities, SaaS companies that track customer-level profitability achieve 15% higher retention rates compared to those that don't.

Implementing a Cost of Service Model

More sophisticated SaaS businesses are implementing detailed cost of service models:

Customer COGS = (Base Platform Costs ÷ Total Customers) +                 (Usage-Based Costs × Customer Usage) +                 (Support Costs × Support Tickets) +                 (Implementation Costs ÷ Useful Life)

This approach provides more accurate profitability metrics and helps identify optimization opportunities at a granular level.

Tracking COGS Trends Over Time

Monitoring how your COGS evolves provides strategic insights:

  • COGS per Customer: Should decrease as you scale if your architecture is efficient
  • COGS as Percentage of Revenue: Should stabilize or decrease as you optimize operations
  • COGS by Feature: Helps identify particularly expensive service components that may need re-engineering

Common Pitfalls in SaaS COGS Tracking

Mixing Growth Investments with Maintenance Costs

Many SaaS companies incorrectly include new feature development in COGS. Remember that only maintenance of existing capabilities should be included, while new development should be treated as an operating expense or capitalized.

Neglecting to Update Allocation Methodologies

As your business scales, the way you deliver your service often changes. Allocation methodologies that made sense at $1M ARR may be inappropriate at $10M ARR. Schedule regular reviews of your COGS policy.

Overlooking Hidden Infrastructure Costs

Many cloud services have complex pricing models with hidden costs like data transfer, storage transactions, or provisioned capacity. Implement comprehensive cloud cost monitoring to capture these expenses.

Conclusion: The Strategic Value of COGS Mastery

For SaaS executives, COGS is far more than an accounting exercise—it's a window into the fundamental economics of your business model. By implementing robust COGS tracking methodologies, you gain:

  • Greater confidence in gross margin projections
  • Clearer understanding of scaling economics
  • Data-driven insights for pricing strategy
  • More effective resource allocation

As the SaaS industry matures and investors focus increasingly on sustainable unit economics rather than pure growth, mastery of COGS will distinguish the companies positioned for long-term success.

By following the framework outlined in this guide, you'll not only ensure accounting compliance but transform COGS tracking from an administrative burden into a strategic advantage that drives business value.

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